
Hey there! I’m Linda, and I’m excited to share my favorite apple cupcake recipe with you today. As someone who’s been baking for over 15 years, I’ve perfected these moist, flavorful cupcakes that capture the essence of fall in every bite. The secret? Fresh, juicy apples and a perfect blend of warm spices that’ll make your kitchen smell absolutely heavenly.
Why You’ll Love These Apple Cupcakes
Before we dive into the recipe, let me tell you why these cupcakes hold a special place in my heart. Every autumn, I make these for my family’s gatherings, and they’ve become our traditional fall dessert. The combination of tender apple pieces, warming cinnamon, and creamy frosting creates pure magic in your mouth.


Key Features
- Made with fresh apples (not apple sauce!)
- Perfectly spiced with cinnamon, nutmeg, and allspice
- Incredibly moist and fluffy texture
- Topped with brown butter cream cheese frosting
- Stays fresh for up to 3 days
- Freezer-friendly
Essential Ingredients
Let me break down the ingredients you’ll need for these delightful cupcakes:
For the Cupcakes:
Ingredient | Amount | Notes |
---|---|---|
All-purpose flour | 2¼ cups | Measured correctly by spooning and leveling |
Baking powder | 2 tsp | For perfect rise |
Baking soda | ½ tsp | Helps with tenderness |
Salt | ½ tsp | Balances sweetness |
Ground cinnamon | 2 tsp | Use Ceylon cinnamon for best flavor |
Ground nutmeg | ½ tsp | Freshly grated if possible |
Ground allspice | ¼ tsp | Adds warmth |
Unsalted butter | 1 cup | Room temperature |
Granulated sugar | 1 cup | |
Light brown sugar | ½ cup | Packed |
Large eggs | 3 | Room temperature |
Vanilla extract | 2 tsp | Pure, not imitation |
Buttermilk | ¾ cup | Room temperature |
Fresh apples | 2 cups | Finely diced |
For the Brown Butter Cream Cheese Frosting:
Ingredient | Amount | Notes |
---|---|---|
Unsalted butter | 1 cup | For browning |
Cream cheese | 12 oz | Full-fat, room temperature |
Powdered sugar | 4 cups | Sifted |
Vanilla extract | 1 tsp | Pure |
Salt | ¼ tsp |


Equipment Needed
Let’s make sure you have all the tools ready:
- Standard 12-cup muffin tin
- Cupcake liners
- Stand mixer or hand mixer
- Large mixing bowls
- Medium saucepan (for browning butter)
- Apple peeler and sharp knife
- Wire cooling rack
- Piping bag and tips (I use Wilton 1M)
- Kitchen scale (recommended)
Step-by-Step Instructions
Preparing the Apples
- Peel and core your apples (I prefer Honeycrisp or Granny Smith)
- Dice them into small, ¼-inch pieces
- Toss with a tablespoon of lemon juice to prevent browning
- Set aside while preparing the batter
Making the Cupcake Batter
- Preheat your oven to 350°F (175°C)
- Line your muffin tin with cupcake liners
- In a medium bowl, whisk together:
- Flour
- Baking powder
- Baking soda
- Salt
- All spices
- In your stand mixer bowl, cream together:
- Room temperature butter
- Both sugars (beat for 5 minutes until light and fluffy)
- Add eggs one at a time, mixing well after each addition
- Mix in vanilla extract
- Alternate adding dry ingredients and buttermilk:
- Start with ⅓ of dry ingredients
- Add ½ of buttermilk
- Another ⅓ of dry ingredients
- Remaining buttermilk
- Final ⅓ of dry ingredients
- Fold in diced apples by hand
Baking Tips
- Fill each cupcake liner ¾ full
- Bake for 20-22 minutes
- Test with a toothpick – it should come out clean
- Cool in pan for 5 minutes
- Transfer to wire rack to cool completely


Making the Brown Butter Cream Cheese Frosting
- Brown the butter:
- Melt butter in saucepan over medium heat
- Stir constantly until golden brown (about 8-10 minutes)
- Watch carefully to prevent burning
- Cool completely until solid again
- Make the frosting:
- Beat cream cheese until smooth
- Add cooled brown butter
- Gradually add powdered sugar
- Mix in vanilla and salt
- Beat until light and fluffy (3-4 minutes)
Decorating Tips
- Wait until cupcakes are completely cool
- Fill piping bag with frosting
- Pipe in a swirl pattern from outside to center
- Optional toppings:
- Caramel drizzle
- Apple chips
- Cinnamon sugar
- Crushed walnuts
Storage and Make-Ahead Tips
Room Temperature
- Store unfrosted cupcakes in airtight container for up to 2 days
- Frosted cupcakes can be stored for 1 day
Refrigerator
- Frosted cupcakes last up to 5 days
- Bring to room temperature before serving
Freezer
- Unfrosted cupcakes freeze well for up to 3 months
- Wrap individually in plastic wrap
- Thaw overnight in refrigerator
Troubleshooting Guide
Here are solutions to common issues you might encounter:
Problem | Cause | Solution |
---|---|---|
Cupcakes sink in middle | Opening oven door too soon | Wait until 20 minutes before checking |
Too dense texture | Over-mixing batter | Mix just until ingredients are combined |
Uneven baking | Oven hot spots | Rotate pan halfway through baking |
Frosting too soft | Ingredients too warm | Chill frosting for 15-20 minutes |
Apple pieces sink | Pieces too large | Dice apples smaller, coat in flour |
Serving Suggestions
- Perfect for fall gatherings
- Delightful with hot apple cider
- Serve with vanilla ice cream
- Pair with hot chocolate
- Great for holiday dessert tables
Variations
Want to mix it up? Try these delicious variations:
- Caramel Apple:
- Add caramel filling center
- Top with caramel drizzle
- Nutty Apple:
- Add ½ cup chopped walnuts to batter
- Garnish with toasted nuts
- Streusel Topped:
- Add crumb topping before baking
- Drizzle with vanilla glaze
- Maple Apple:
- Replace vanilla extract with maple
- Use maple cream cheese frosting
Frequently Asked Questions
Q: Can I use apple sauce instead of fresh apples?
A: While you can, I don’t recommend it. Fresh apples provide better texture and more authentic flavor.
Q: Why do my apples float to the top during baking?
A: Try tossing your diced apples in a tablespoon of flour before adding them to the batter.
Q: Can I make these gluten-free?
A: Yes! Use a 1:1 gluten-free flour blend. I recommend Bob’s Red Mill or King Arthur.
Q: How do I prevent my cream cheese frosting from being runny?
A: Make sure your cream cheese is straight from the fridge, while your brown butter is cool but soft.
Q: Can I make mini cupcakes instead?
A: Absolutely! Reduce baking time to 12-15 minutes and check with a toothpick.
My Personal Tips
After years of making these cupcakes, here are my top tips:
- Don’t skip the room temperature ingredients
- Brown butter makes ALL the difference
- Fresh spices are worth the investment
- Let the cupcakes cool COMPLETELY before frosting
- Quality vanilla extract elevates the flavor
Remember, baking is part science and part love. Don’t be afraid to experiment once you’ve mastered the basic recipe. I’d love to hear how your apple cupcakes turn out! Feel free to leave a comment below with your experience or any questions you might have.
Happy baking!
Linda
[Recipe Card]
Apple Cupcakes with Brown Butter Cream Cheese Frosting |
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Prep Time: 30 minutes |
Cook Time: 22 minutes |
Total Time: 52 minutes |
Yield: 24 cupcakes |
Category: Dessert |
Cuisine: American |
Calories per serving: 285 |